By remove do you mean convert to a hard top?
Some have done this on the board but it is a lot of work.
If you mean simply taking the roof panels out, pull the lever and lift. Don't drop them and put them in the T-Top bags in the trunk.
If you don't have the protective bags you could make some or order them from one of the frendly vendors on the site.
If you want to get anal, you could use some straps to hold them down in the trunk like many other T-top cars had.