No worries, and don't feel bad, I am still confused!
I have a feeling you may need another machine shop, but maybe not.
There are two basic clearances that must be checked. The first, and most discussed, is the difference between the size of the journal and the inner diameter of the big end of the rod when the bearings are installed and the rod cap torqued down.
The other clearance which we don't talk about very often but is also important is the clearance between the two rods that occupy the same journal.
You can have a bent crank but normally, I think, that causes the crank to run out of round as it lies in the mainbearings.
I don't think I have ever heard of a crank that was bent in a rod journal.
Maybe, it is time for a second opinion? A year is a long time to be in a machine shop. Of course, I do have a Camaro that has been in the paint shop for almost 13 months now........sigh........
Is there some one living in the vicinity that can help you?