Problem resolved after I exhausted all options and money LOL. After all was replaced and done it still was rough. Took it to our local GN expert and it was the yellow wire within the harness that leads to the Ignition module to the driver side that was split. Took apart the harness and it broke apart. Once corrected all was solved, however, that issue blew the original module and one replacement because of the short. Oh well, lesson learned and it runs better than ever with all the new parts and a great tune.